PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g23830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 1235aa    MW: 138022 Da    PI: 5.3695
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g23830.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-08911964346
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.......TTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmg.......kgRtlkqcksrwqk 46 
                      +WT+eE+e + ++v+ +G +    Wk I +          k+Rt+ ++k++w +
   Vang06g23830.1 911 PWTAEEEEMIREGVQTFGFNdpkKWKNILAFGShvfekvgKRRTPQDLKDKWKN 964
                      7**********************99999987777888888************98 PP

2AP256.66.2e-189761025255
             AP2    2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55  
                       y+GVr++  +g+WvAeIr+p++   r r +lg+f taeeAa a+++a+++l+g
  Vang06g23830.1  976 EYRGVRQRT-WGKWVAEIREPKK---RSRLWLGSFATAEEAAFAYDQAARRLYG 1025
                      69****999.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.716618667IPR019787Zinc finger, PHD-finger
SuperFamilySSF579031.02E-8618669IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.107.8E-10618668IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002491.3E-5620665IPR001965Zinc finger, PHD-type
PROSITE patternPS013590621664IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF466896.43E-10906967IPR009057Homeodomain-like
SMARTSM007171.8E-6908968IPR001005SANT/Myb domain
CDDcd116607.46E-12910967No hitNo description
Gene3DG3DSA:1.10.10.601.4E-9911965IPR009057Homeodomain-like
PROSITE profilePS500907.619911966IPR017877Myb-like domain
PfamPF139211.8E-7912966No hitNo description
CDDcd000184.61E-199751034No hitNo description
Gene3DG3DSA:3.30.730.104.2E-299761034IPR001471AP2/ERF domain
PfamPF008477.2E-119761025IPR001471AP2/ERF domain
PROSITE profilePS5103222.5769761033IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-209761034IPR016177DNA-binding domain
SMARTSM003808.7E-369761039IPR001471AP2/ERF domain
PRINTSPR003678.7E-9977988IPR001471AP2/ERF domain
PRINTSPR003678.7E-99991015IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1235 aa     Download sequence    Send to blast
LKTPLSMDGG DDPSALSWLW VIEALAARKE ISNPTLLSLI DAAPVGKDKF GENVKEMVSL  60
RCLEKLSTIM FDGVASSSSD SRAGFDFSRS CQDVLQEILD EIPLSNLKMN GAQLLKSDLY  120
PFINHKRAVT STCHLEQLRQ TILEGTHPHT DYLKERSGLF PQNNSYSVIV NDVNRDDHSA  180
KEAGNSANTE NVLGKDNSVS LTLENGNKSS REHLLDNNSS PSKRSRVYSV DDYLTKHFHG  240
KQVCVKECGD FLRTSKRVKL SASTSFEPRK EKPDSEQGDH HVENNNKETV GGGFSEDIPY  300
RCIVSKLCQP SSHIEVPPDE SNIPFNDALM LQHTFGGENS QQQLVKSIPH EALADGIQHG  360
ISGGKPKSKH EKDLQLEDPN DSPHQIAGVK ALDHTGNGCR VEESGDIGYQ SETNSLKMKK  420
QTVQNLCLKC NEGDQLPISD VNVVQPVVTE CCLGMETTMP TNDANAEKNH QTINLHQPKQ  480
TEPDIAALNL SQESVACDET IVGVVNGCGA EVVTECCLGM ATTMPTNDAN AEKNQQTINL  540
HQPKQTEPDI EALNLSQEPV ACDETIVGVV NGCGAELSSD SDEYHNEKKC LEAKKHEFLH  600
SHCTVDQDFS AMNEPNVKNL CMKCNQGGQL LACKTTTCPM MVHENCLGAS AQCITKGDFF  660
CPFCTYSRTI SEYIEAKKEA SLARKELAIF ISKGKMSRAA ESLLYEFRTQ EHVFSRKSSE  720
YEHIHVKNKR DEQLTRCGDN REDHVDEHAN EANNLQFGRS QQQAHISCTY SSFREKENIS  780
NGSVEFLREE KIGQMPNAKN ITGVRGEENK LPTDHVDGLV GDTCTVEKEA LVNKSNAGYE  840
SPQETAKHLD TDGATESVSE HNTGKEEMSE NECEKHSISR YSMRYRKHKM QCKPEASPSF  900
LDNQLRRKYI PWTAEEEEMI REGVQTFGFN DPKKWKNILA FGSHVFEKVG KRRTPQDLKD  960
KWKNMGKGGP QNASCEYRGV RQRTWGKWVA EIREPKKRSR LWLGSFATAE EAAFAYDQAA  1020
RRLYGPDAYL NLPHMQPNLI NSTTKSQNFK WFPSNNFISM FPSRGLLNLN AQPSLHLIHQ  1080
RLQQLKHNGV SAPTQPPHSK VVELDNLVNQ NHPEILPPLP QDSQASPQKQ TADFEEKPEI  1140
DLLEFLQQMG ILKDEREAEK TDSSGSSAVS EAASRDESEQ PGVFSDMSSV NWEELIEMHD  1200
HEVVCNYLAS EEILQFEAYD TNEDLTFSTS IWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-189771033360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-189771033663ATERF1
3gcc_A2e-189771033663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514474.10.0PREDICTED: uncharacterized protein LOC106772532 isoform X1
TrEMBLA0A0L9TUH60.0A0A0L9TUH6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SU880.0A0A0S3SU88_PHAAN; Uncharacterized protein
STRINGGLYMA04G00630.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-63ERF family protein